population-ecology

This app projects a user-defined Leslie (age-classified) matrix to examine population changes through time.

Build stochastic demographic models of extinct megafauna of Sahul

PySide6 app of interactive ecology and evolutionary biology simulations, including Lotka-Volterra and Hawk-Dove

Fits a dynamic (multi-season) occupancy model for cetacean vessel-survey sightings in JAGS. Config-driven data cleaning, spatial gridding, environmental covariates, and diagnostics for any species or study area.

Bayesian state-space model estimating grey seal pup production from aerial surveys, with survival and carcass persistence explicitly modelled (Goldman et al., Royal Society Open Science)

Machine learning based species occupancy-detection model for prediction problem

Random bits of code I've developed

Code for the Population Ecology & Management group project, where I was tasked with analysing BTO bird population data in R Studio between generalist and specialist species.

R package for computing variance effective population size (Ne) in stage-structured populations — implements Yonezawa et al. (2000)

Population ecology analysis of kangaroo rat (Dipodomys spp.) distributions across Great Basin desert gradients.

Shiny web application for Lahontan Cuttroat Trout Population Simulator.

Trying to understand population models

This is an open-access database of population models of various populations across taxa. Here, we include analyses that disentangle the roles of the underlying biotic and abiotic drivers.

Development history of a Bayesian state-space model for grey seal pup production: NIMBLE/JAGS model iterations preceding the published Stan version (BayesGreySealPupModel)

Simulate population dynamics and survey data that respond to stream hydrology using historical data from USGS stream gages.