Cython bindings and Python interface to HMMER3.
A package to annotate protein sequences
Annotate DNA sequences for Gene Ontology terms
Query sequence database by HMMs arranged in predefined synteny structure
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
A Pure-Python parser of HMMER3 output
Django website project for common sequence search tools.
Build protein families from sequence clusters by iterative HMM search over very large databases — streaming, deterministic, pyHMMER-based.
An ML-based predictor of GPCR/G-protein couplings using only sequence information
A lightweight rewrite of run_dbcan for better multithread performance
Command-line tools for genomics and proteomics analysis
basic visualization of hmm profile matches to multiple fasta files
Find NLR hmms in protein sequences.
MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.
Create HMMs from KEGG orthologs
This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.
A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.
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