nf-core CI

Workflow runs for nf-core CI

• Fixed bambu subsetting module, completed full BAM input test run, nee…

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  nf-core CI#65:Commitf729d72pushedbynumber-25
  dev

  Oct 26, 20262m 24s
  More actions for workflow run 65

• Still broken, but the project is moving forwards after a long time in…

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  nf-core CI#64:Commit4f56697pushedbynumber-25
  dev

  Oct 23, 20262m 48s
  More actions for workflow run 64

• changed the way that ch_sample is generated, shifted to much more sim…

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  nf-core CI#63:Commit3e675b2pushedbynumber-25
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  Jun 12, 20262m 42s
  More actions for workflow run 63

• working on migration to 26.10 syntax, still broken - using nextflow l…

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  nf-core CI#62:Commit40bb8adpushedbynumber-25
  dev

  Jun 10, 20261m 24s
  More actions for workflow run 62

• changed isoquant configs, slowly modifying code so that it meets synt…

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  nf-core CI#61:Commit6240b80pushedbynumber-25
  dev

  Jun 8, 20261m 49s
  More actions for workflow run 61

• minor params tweaks, ch_transcriptome_fasta

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  nf-core CI#60:Commit9aeee39pushedbynumber-25
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  May 18, 20262m 23s
  More actions for workflow run 60

• minor tweaks in schema

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  nf-core CI#59:Commitfc5b1bapushedbynumber-25
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  May 18, 20262m 15s
  More actions for workflow run 59

• removing uneeded config includes

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  nf-core CI#58:Commitf7d734fpushedbynumber-25
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  Apr 24, 20263m 9s
  More actions for workflow run 58

• ngs_bits_build in bam_qc subworkflow

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  nf-core CI#57:Commit5bb2113pushedbynumber-25
  dev

  Apr 23, 20263m 49s
  More actions for workflow run 57

• fixing trace_timestamp wording, final charm....

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  nf-core CI#56:Commit8b900e0pushedbynumber-25
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  Apr 23, 20263m 52s
  More actions for workflow run 56

• fixing trace_timestamp wording

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  nf-core CI#55:Commit7b5d628pushedbynumber-25
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  Apr 23, 20263m 21s
  More actions for workflow run 55

• replaced trace_timestamp function with https://github.com/nextflow-io…

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  nf-core CI#54:Commit0004fb1pushedbynumber-25
  dev

  Apr 23, 20263m 39s
  More actions for workflow run 54

• replaced trace_timestamp function with https://github.com/nextflow-io…

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  nf-core CI#53:Commit1a6cfb8pushedbynumber-25
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  Apr 23, 20262m 54s
  More actions for workflow run 53

• removed check_max() function and replaced with resourceLimits directive

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  nf-core CI#52:Commit9de4be2pushedbynumber-25
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  Apr 23, 20263m 3s
  More actions for workflow run 52

• Update ci.yml - from 24.10.0 to 25.10.10 NXF_VER

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  nf-core CI#51:Commit6501ceepushedbynumber-25
  dev

  Apr 23, 20263m 16s
  More actions for workflow run 51

• added docs about which modules are skipped when mapping to transcript…

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  nf-core CI#50:Commited67048pushedbynumber-25
  dev

  Apr 23, 20262m 31s
  More actions for workflow run 50

• finished all inputs testing, getting closer to master release, few mo…

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  nf-core CI#49:Commitb0d7be1pushedbynumber-25
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  Mar 6, 20263m 6s
  More actions for workflow run 49

• fixing up channel logic, doing more tests

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  nf-core CI#48:Commit0dd79b6pushedbynumber-25
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  Feb 23, 20263m 4s
  More actions for workflow run 48

• workflow tweaks

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  nf-core CI#47:Commit4a1a1cdpushedbynumber-25
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  Feb 16, 20263m 8s
  More actions for workflow run 47

• appears that sylph-tax is functional, isoquant taking far too long on…

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  nf-core CI#46:Commit76779ccpushedbynumber-25
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  Feb 4, 20262m 58s
  More actions for workflow run 46

• toying more with sylph-tax, rejigging main workflow.nf

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  nf-core CI#45:Commit22c587bpushedbynumber-25
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  Feb 2, 20262m 21s
  More actions for workflow run 45

• testing bam input and mapping to transcriptome

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  nf-core CI#44:Commit7881bd6pushedbynumber-25
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  Jan 30, 20263m 2s
  More actions for workflow run 44

• getting closer to testing sylph out, need to index unmapped bam and c…

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  nf-core CI#43:Commitf9c5123pushedbynumber-25
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  Jan 27, 20262m 51s
  More actions for workflow run 43

• adding in sylph profiling of unmapped reads, still much to do

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  nf-core CI#42:Commit92f5838pushedbynumber-25
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  Jan 22, 20263m 23s
  More actions for workflow run 42

• fixing bam inputs

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  nf-core CI#41:Commit2006a41pushedbynumber-25
  dev

  Jan 20, 20263m 23s
  More actions for workflow run 41