Issues

• Acknowledgements in README.md

  publication
  mpc-bioinformatics/macproqc#202 · Filter by author KarinSchork opened on Nov 4, 2026

• unsupported tool identifier value

  publication
  mpc-bioinformatics/macproqc#200 · Filter by author di-hardt opened on Oct 14, 2026
  1

  

• unsupported tool DOI value

  publication
  mpc-bioinformatics/macproqc#199 · Filter by author di-hardt opened on Oct 14, 2026
  1

  

• change python to helper module in meta

  publication
  mpc-bioinformatics/macproqc#198 · Filter by author di-hardt opened on Oct 14, 2026
  

• Alternative paths: identification free execution

  discussion
  mpc-bioinformatics/macproqc#194 · Filter by author julianu opened on Oct 6, 2026

• wire up remainings (metrics) into pipeline

  enhancement
  mpc-bioinformatics/macproqc#187 · Filter by author di-hardt opened on Sep 30, 2026
  

• Use nicer default spike-ins

  enhancement
  mpc-bioinformatics/macproqc#184 · Filter by author julianu opened on Sep 4, 2026
  

• Double-check citations.md and add all tools

  enhancement
  mpc-bioinformatics/macproqc#183 · Filter by author julianu opened on Sep 4, 2026

• dot-net / mono update

  enhancement
  Task

  mpc-bioinformatics/macproqc#175 · Filter by author di-hardt opened on Jun 23, 2026
  2

  

• collect_metrics

  Task

  mpc-bioinformatics/macproqc#173 · Filter by author di-hardt opened on Jun 23, 2026
  

• feature_detection_dda

  Task

  mpc-bioinformatics/macproqc#172 · Filter by author di-hardt opened on Jun 23, 2026
  

• spikein_metrics

  Task

  mpc-bioinformatics/macproqc#171 · Filter by author di-hardt opened on Jun 23, 2026
  

• Bruker headers cannot be read

  bug
  mpc-bioinformatics/macproqc#161 · Filter by author KarinSchork opened on Mar 5, 2026
  1

  

• clean up visualization script

  enhancement
  mpc-bioinformatics/macproqc#160 · Filter by author KarinSchork opened on Mar 4, 2026
  

• spike-in-metrics peptidoform sequence

  clarification
  mpc-bioinformatics/macproqc#159 · Filter by author KarinSchork opened on Feb 11, 2026
  3

  

• mzqc export does not work for >=2 raw files

  bug
  mpc-bioinformatics/macproqc#155 · Filter by author KarinSchork opened on Feb 11, 2026
  1

  

• Change: fractions instead of counts for missed cleavages

  mpc-bioinformatics/macproqc#154 · Filter by author julianu opened on Jan 28, 2026
  

• Add (optional) output of peptides after FDR filtering

  enhancement
  mpc-bioinformatics/macproqc#152 · Filter by author julianu opened on Jan 28, 2026
  

• Use OBO separation in HDF5 for term ! description

  mpc-bioinformatics/macproqc#151 · Filter by author julianu opened on Jan 28, 2026
  

• How to represent pump pressure correctly

  mpc-bioinformatics/macproqc#149 · Filter by author julianu opened on Jan 22, 2026
  2

  

• Handling of empty or unusual raw files

  discussion
  mpc-bioinformatics/macproqc#143 · Filter by author KarinSchork opened on Oct 29, 2025
  1

• Flag for setting figure output

  mpc-bioinformatics/macproqc#141 · Filter by author di-hardt opened on Oct 1, 2025
  1

  

• HDF5 showing up in qc_results folder

  mpc-bioinformatics/macproqc#140 · Filter by author di-hardt opened on Oct 1, 2025
  1

  

• Problems with some older / slightly corrupt (?) .d Bruker runs

  mpc-bioinformatics/macproqc#137 · Filter by author julianu opened on Sep 16, 2025
  1

  

• Visualization of Bruker and Thermo files together

  mpc-bioinformatics/macproqc#135 · Filter by author KarinSchork opened on Aug 19, 2025