Issues

• Utilize a Galaxy Tool Shed Dry Run for More Robust Shed Creation

  galaxyproject/planemo#1771 · Filter by author jmchilton opened on Oct 29, 2026

• Tool Shed repository installs have no timeout; a hung install blocks planemo indefinitely

  galaxyproject/planemo#1768 · Filter by author jmchilton opened on Oct 29, 2026

• shed_lint: warn on missing name in single-repo .shed.yml and on unknown keys

  galaxyproject/planemo#1765 · Filter by author arash77 opened on Oct 28, 2026

• Document and surface tool_data_table_conf.xml.test discovery for workflow tests

  galaxyproject/planemo#1764 · Filter by author jmchilton opened on Oct 27, 2026

• Collection element assertions crash on expression.json elements (e.g. outputs skipped by when)

  galaxyproject/planemo#1759 · Filter by author jmchilton opened on Oct 26, 2026

• get_tool_ids_for_workflow KeyErrors on embedded GalaxyUserTool steps; managed test user lacks user_tool_execute role

  galaxyproject/planemo#1757 · Filter by author jmchilton opened on Oct 26, 2026

• Fail tool tests that print secrets

  galaxyproject/planemo#1746 · Filter by author arash77 opened on Oct 20, 2026

• Support collection name assertions (metadata: {name:}) in workflow tests

  galaxyproject/planemo#1745 · Filter by author jmchilton opened on Oct 19, 2026
  1

• Clarify and enforce output collection sampling in invocation test generation

  galaxyproject/planemo#1740 · Filter by author jmchilton opened on Oct 11, 2026

• Add configuration linting backed by Click option definitions

  galaxyproject/planemo#1739 · Filter by author jmchilton opened on Oct 11, 2026

• Choose Galaxy-compatible Python defaults for older releases and local checkouts

  galaxyproject/planemo#1738 · Filter by author jmchilton opened on Oct 11, 2026

• Document a Python version-based install in docs

  docs missingenhancement
  galaxyproject/planemo#1737 · Filter by author jmchilton opened on Oct 11, 2026
  

• Lint: metadata_source is unvalidated, and format_source accepts any param name

  enhancement
  galaxyproject/planemo#1722 · Filter by author jmchilton opened on Sep 21, 2026

• Build and Target a Modern Galaxy Docker Image

  bugenhancement
  Bug

  galaxyproject/planemo#1721 · Filter by author jmchilton opened on Sep 21, 2026

• Retire or Modernize the Planemo Virtual Appliance Maybe?

  docs missingenhancementhelp wanted
  galaxyproject/planemo#1720 · Filter by author jmchilton opened on Sep 21, 2026
  1

• Docs toctree has no task-level grouping; automating_workflows is a 31-line stub

  docs missingworkflows
  galaxyproject/planemo#1719 · Filter by author jmchilton opened on Sep 19, 2026

• Workflow tutorial is anchored to the archived usegalaxy-eu/workflow-testing repo

  docs missingworkflows
  galaxyproject/planemo#1718 · Filter by author jmchilton opened on Sep 19, 2026

• Workflow test collection assertions are silently skipped unless spelled element_tests

  galaxyproject/planemo#1705 · Filter by author jmchilton opened on Sep 14, 2026

• workflow_lint --iwc does not check the date on the newest CHANGELOG heading

  galaxyproject/planemo#1694 · Filter by author jmchilton opened on Sep 9, 2026

• workflow_lint --iwc should error, not warn, when a workflow has no test cases

  galaxyproject/planemo#1693 · Filter by author jmchilton opened on Sep 9, 2026

• Run Engine for Embedded Galaxy

  enhancement
  galaxyproject/planemo#1686 · Filter by author jmchilton opened on Aug 25, 2026

• Deduplicate planemo.io.wait_on in favor of galaxy.util.wait.wait_on

  galaxyproject/planemo#1680 · Filter by author jmchilton opened on Aug 20, 2026

• Meta: repository-level linting for data managers and tool data tables

  enhancementlinting
  galaxyproject/planemo#1672 · Filter by author jmchilton opened on Jul 24, 2026
  2

• Global config values bypass click.Path conversion (resolve_path is dead code)

  galaxyproject/planemo#1667 · Filter by author jmchilton opened on Jul 21, 2026

• Add a GA4GH WES execution engine to planemo run (--engine wes)

  galaxyproject/planemo#1651 · Filter by author jmchilton opened on Jun 6, 2026