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1. ML-Pipeline ML-Pipeline Public

   Forked from azodichr/ML-Pipeline

   Scripts for Shiu Lab Machine Learning - primarily using SK-Learn

   Python 1

2. CutTag_library CutTag_library Public

   Forked from stewart-lab/CutTag_library

   Code for processing cut and tag data

   Python

3. scRNAseq_downstream scRNAseq_downstream Public

   Forked from stewart-lab/scRNAseq_downstream

   Code for downstream analysis of single cell data

   Jupyter Notebook

4. scRNAseq_library scRNAseq_library Public

   Forked from stewart-lab/scRNAseq_library

   Process single cell data from raw fastqs to a clustered Seurat object

   Jupyter Notebook

5. seqtools seqtools Public

   Forked from stewart-lab/seqtools

   dockerized tools for tasks related to RNA-Seq

   R

6. skimgpt skimgpt Public

   Forked from stewart-lab/skimgpt

   Evaluate hypotheses at scale.

   Python