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Add SynthSeg.json for Slicer extension catalog - #2430
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niyaziacer wants to merge 3 commits into
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SynthSeg brain MRI segmentation (Billot et al.) with optional cortical parcellation, running in Slicer's own Python. Notes for reviewers: - Model weights: redistributed with the permission of the SynthSeg authors B. Billot and J.E. Iglesias (e-mail, 23 October 2026). They are not in the extension package; they are downloaded on first use from the repository's models-v1 release and verified with SHA-256. - Dependencies: on first use the module asks the user before pip-installing tensorflow==2.21 and tf-keras==2.21 into Slicer's Python, with numpy pinned to its current version. SynthSeg runs in a separate PythonSlicer process. Tested in Slicer 5.12.3 next to TotalSegmentator and OpenMAP-T1; segmentation volumes match the original TensorFlow 2.4.1 environment within 0.007%. - The bundled SynthSeg source (Apache 2.0) is installed with the module.
SynthSeg brain MRI segmentation (Billot et al.) with optional cortical parcellation, running in Slicer's own Python. Notes for reviewers: - Model weights: redistributed with the permission of the SynthSeg authors B. Billot and J.E. Iglesias (e-mail, 23 October 2026). They are not in the extension package; they are downloaded on first use from the repository's models-v1 release and verified with SHA-256. - Dependencies: on first use the module asks the user before pip-installing tensorflow==2.21 and tf-keras==2.21 into Slicer's Python, with numpy pinned to its current version. SynthSeg runs in a separate PythonSlicer process. Tested in Slicer 5.12.3 next to TotalSegmentator and OpenMAP-T1; segmentation volumes match the original TensorFlow 2.4.1 environment within 0.007%. - The bundled SynthSeg source (Apache 2.0) is installed with the module.
Fix JSON formatting by adding a newline at the end of the file.
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SynthSeg brain MRI segmentation (Billot et al.) with optional cortical parcellation, running in Slicer's own Python.
Notes for reviewers:
New extension
Tier 1
Any extension that is listed in the Extensions Catalog must fulfill these requirements.
Slicer(unless it explicitly provides a bridge between Slicer and a tool or library), because it would make it more difficult to find extensions if the name of many started with the same word.3d-slicer-extensionGitHub topic so that it is listed here. To edit topics, click the settings icon in the right side of "About" section header and enter3d-slicer-extensionin "Topics" and click "Save changes". To learn more about topics, read https://help.github.com/en/articles/about-topicsSettingsand in repository settings uncheckWiki,Projects, andDiscussions(if they are currently not used).Aboutin the top-right corner of the repository main page and uncheckReleasesandPackages(if they are currently not used)Tier 3
Community-supported extensions.
Tier 5
Critically important extensions, supported by Slicer core developers. New Slicer Stable Release is released only if all Tier 5 extension packages are successfully created on all supported platforms.