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Janssena/README.md

Heya, I'm Alexander!

Postdoctoral researcher and university lecturer at AmsterdamUMC.
Computational Biologist at ErasmusMC.
AI scientist at THETA-TEAM.

Previously: Use-case leader at PHEMS.eu.

  • Things I use often: julia, pytorch, bindcraft, vs-code, chimeraX, inkscape.
  • Maintainer of opticlot.com, web-application supporting personalised treatment of patients with rare bleeding disorders worldwide.

Pinned Loading

  1. BioFold.jl BioFold.jl Public

    Pure julia implementation of abstract types and interface for macromolecular structure prediction models.

    Julia 2

  2. DeepCompartmentModels.jl DeepCompartmentModels.jl Public

    Package for fitting models according to the deep compartment modeling framework for pharmacometric applications.

    Julia 13 5

  3. LuxTriangleAttention.jl LuxTriangleAttention.jl Public

    Implementation of triangle attention layers in Lux.jl

    Julia

  4. GenerativeFlows.jl GenerativeFlows.jl Public

    This package provides an unified interface for flow-based generative models in Julia. It focusses on Flow matching, normalizing flows, and diffusion models.

    Julia

  5. NaturalOptimisers.jl NaturalOptimisers.jl Public

    Implementation of plug-and-play variational optimisers in Julia.

    Julia

  6. LuxProteinMPNN.jl LuxProteinMPNN.jl Public

    Pure Julia implementation of ProteinMPNN by @dauparas and the Baker lab.

    Julia 1