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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 5

Repositories

Showing 10 of 718 repositories
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff's past year of commit activity
    Python 0 MIT 1 5 2 Updated Oct 23, 2026
  • aind-ibl-ephys-alignment-preprocessing Public

    Library to prepare histology and ephys for the IBL ephys alignment GUI

    AllenNeuralDynamics/aind-ibl-ephys-alignment-preprocessing's past year of commit activity
    Python 0 MIT 1 0 2 Updated Oct 22, 2026
  • GIAnT-Python Public

    Glutamate Imaging Analysis Toolbox, Python implementation

    AllenNeuralDynamics/GIAnT-Python's past year of commit activity
    Python 0 MIT 0 0 2 Updated Oct 22, 2026
  • aind-sharepoint-service Public

    REST service to connect to sharepoint and return information.

    AllenNeuralDynamics/aind-sharepoint-service's past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 22, 2026
  • zephyr Public

    A network to predict breathing signals from video

    AllenNeuralDynamics/zephyr's past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 22, 2026
  • aind-lightsheet-registration Public

    Register cleared light-sheet brains to a template and on to CCF

    AllenNeuralDynamics/aind-lightsheet-registration's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 22, 2026
  • aind-video-utils Public

    Utilities to work with video files

    AllenNeuralDynamics/aind-video-utils's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 22, 2026
  • one-liner Public

    adapter pattern implemented as zmq client/server

    AllenNeuralDynamics/one-liner's past year of commit activity
    Python 3 MIT 0 28 1 Updated Oct 22, 2026
  • GIAnT-MATLAB Public

    Glutamate Imaging Analysis Toolbox, MATLAB implementation

    AllenNeuralDynamics/GIAnT-MATLAB's past year of commit activity
    MATLAB 3 MIT 2 3 3 Updated Oct 22, 2026
  • Aind.Experiment.VrForaging Public

    A repository to run VrForaging behavior experiments and compatible physiology platforms in AIND

    AllenNeuralDynamics/Aind.Experiment.VrForaging's past year of commit activity
    Python 0 MIT 1 0 2 Updated Oct 22, 2026

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